STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_1084PFAM: Peptidase M1 membrane alanine aminopeptidase; KEGG: amt:Amet_4762 peptidase M1, membrane alanine aminopeptidase-like protein. (482 aa)    
Predicted Functional Partners:
Cphy_1356
PFAM: beta-lactamase domain protein; TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: mbu:Mbur_2318 tetratricopeptide protein.
  
 
 0.700
Cphy_1743
PFAM: NADH:flavin oxidoreductase/NADH oxidase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Acetoacetate decarboxylase; KEGG: cac:CAC1044 NADH:flavin oxidoreductase, possible NADH oxidase.
  
 
 0.633
Cphy_2530
Peptidase M24; PFAM: creatinase; peptidase M24; KEGG: tte:TTE1280 Xaa-Pro aminopeptidase.
  
 
 0.609
Cphy_2013
PFAM: proteinase inhibitor I4 serpin; KEGG: tte:TTE1560 serine protease inhibitor; Belongs to the serpin family.
   
  0.597
Cphy_2014
PFAM: proteinase inhibitor I4 serpin; KEGG: tte:TTE1560 serine protease inhibitor; Belongs to the serpin family.
   
  0.597
nadE
NAD+ synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
  
 0.584
Cphy_0754
Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family.
     
  0.575
Cphy_2792
PFAM: Fmu (Sun) domain protein; KEGG: cth:Cthe_3160 putative RNA methylase, NOL1/NOP2/sun family.
 
    0.549
Cphy_2098
PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: lwe:lwe0750 amidohydrolase, putative.
    
 0.540
Cphy_1823
TIGRFAM: small GTP-binding protein; PFAM: elongation factor G domain protein; protein synthesis factor GTP-binding; elongation factor G domain IV; protein of unknown function DUF901; KEGG: cth:Cthe_0033 small GTP-binding protein.
  
 
 0.533
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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