STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_1096PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bce:BC4940 ABC transporter ATP-binding protein. (203 aa)    
Predicted Functional Partners:
Cphy_1097
PFAM: conserved hypothetical protein; KEGG: btk:BT9727_4653 probable membrane protein.
 
     0.944
Cphy_1094
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: amt:Amet_3812 RNA polymerase, sigma-24 subunit, ECF subfamily.
  
  
 0.696
Cphy_1095
TIGRFAM: signal peptidase I; PFAM: peptidase S24 and S26 domain protein; KEGG: gvi:glr2481 signal peptidase I; Belongs to the peptidase S26 family.
       0.693
Cphy_3577
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: lmf:LMOf2365_2171 ABC transporter, ATP-binding protein.
  
     0.502
Cphy_1005
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tko:TK2026 ABC-type multidrug transport system, ATPase component.
 
     0.486
Cphy_2062
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mta:Moth_2297 daunorubicin resistance ABC transporter ATP-binding subunit.
 
     0.459
Cphy_0886
KEGG: llc:LACR_1479 hypothetical protein.
  
  
 0.458
Cphy_2808
KEGG: ctc:CTC00440 alpha-clostripain-like protein.
  
  
 0.458
Cphy_3851
Hypothetical protein; KEGG: pfa:PF11_0507 antigen 332.
  
  
 0.458
Cphy_1055
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tte:TTE2769 ABC-type multidrug/protein/lipid transport system, ATPase component.
 
 
  
0.441
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.