STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_1099KEGG: cbe:Cbei_2796 Mug G:T/U mismatch-specific DNA glycosylase. (173 aa)    
Predicted Functional Partners:
Cphy_3362
A/G-specific adenine glycosylase; Adenine glycosylase active on G-A mispairs.
    
 0.868
Cphy_2155
PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: cbe:Cbei_2111 protein tyrosine phosphatase.
 
      0.712
Cphy_0982
KEGG: cac:CAC0222 exodeoxyribonuclease (exoA); TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase.
    
 0.680
Cphy_1100
PFAM: peptidase M42 family protein; KEGG: cpe:CPE0995 probable glucanase.
       0.615
Cphy_0286
methylated-DNA--protein-cysteine methyltransferase; Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction: the enzyme is irreversibly inactivated.
 
  
 0.532
guaA
GMP synthase, large subunit; Catalyzes the synthesis of GMP from XMP.
       0.473
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
     
 0.470
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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