Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Cphy_1118PFAM: extracellular solute-binding protein family 1; KEGG: bcl:ABC0558 sugar ABC transporter substrate-binding protein. (541 aa)    
Predicted Functional Partners:
Cphy_1120
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sma:SAV1455 putative ABC transporter permease protein.
 
   0.910
Cphy_1119
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bcl:ABC0556 sugar ABC transporter permease.
 
    0.897
Cphy_2656
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bcl:ABC0556 sugar ABC transporter permease.
 
    0.714
Cphy_0393
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bcl:ABC3119 sugar ABC transporter permease.
 
    0.653
Cphy_3569
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: gtn:GTNG_1772 hypothetical protein.
 
    0.653
Cphy_2192
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bcl:ABC3119 sugar ABC transporter permease.
 
    0.629
Cphy_0664
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bcl:ABC0556 sugar ABC transporter permease.
 
    0.617
Cphy_2733
PFAM: extracellular solute-binding protein family 1; KEGG: art:Arth_3316 extracellular solute-binding protein, family 1.
  
     0.616
Cphy_0860
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: csc:Csac_2554 binding-protein-dependent transport systems inner membrane component.
 
    0.614
Cphy_1127
KEGG: bcl:ABC0535 hypothetical protein.
  
     0.610
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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