Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Cphy_1125PFAM: glycoside hydrolase family 3 domain protein; KEGG: tte:TTE0215 Beta-glucosidase-related glycosidases. (517 aa)    
Predicted Functional Partners:
Cphy_2332
Beta-N-acetylhexosaminidase; PFAM: glycoside hydrolase family 3 domain protein; KEGG: lsl:LSL_1568 beta-N-acetylhexosaminidase.
  
  
 
0.927
Cphy_1800
PFAM: glycoside hydrolase family 18; Carbohydrate-binding family V/XII; SMART: chitinase II; KEGG: cbe:Cbei_2830 glycoside hydrolase, family 18.
     
 0.903
Cphy_2572
PFAM: glycoside hydrolase family 18; SMART: chitinase II; KEGG: bha:BH0916 chitinase; Belongs to the glycosyl hydrolase 18 family.
     
 0.903
Cphy_3239
PFAM: Glycoside hydrolase, family 20, catalytic core; KEGG: cpf:CPF_1103 glycosyl hydrolase, family 20.
    
 0.903
Cphy_3571
PFAM: Glycoside hydrolase, family 20, catalytic core; KEGG: spd:SPD_1969 glycosyl hydrolase-related protein.
    
 0.903
Cphy_1124
PFAM: conserved hypothetical protein; KEGG: cac:CAC0185 uncharacterized membrane protein, YBBC B.subtilis ortholog.
 
    0.869
Cphy_1126
PFAM: ATPase BadF/BadG/BcrA/BcrD type; KEGG: cac:CAC0183 transcriptional regulators of NagC/XylR (ROK) family, sugar kinase.
 
    0.807
anmK
Protein of unknown function UPF0075; Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling; Belongs to the anhydro-N-acetylmuramic acid kinase family.
 
   
 0.717
Cphy_1127
KEGG: bcl:ABC0535 hypothetical protein.
 
    0.673
Cphy_0866
PFAM: beta-lactamase; KEGG: sil:SPO1641 beta-lactamase.
  
 0.557
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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