STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_1141KEGG: amt:Amet_3459 hypothetical protein. (319 aa)    
Predicted Functional Partners:
Cphy_1777
KEGG: swo:Swol_1838 hypothetical protein.
 
     0.581
Cphy_1098
PFAM: Rieske [2Fe-2S] domain protein; FAD dependent oxidoreductase; KEGG: cpf:CPF_0767 iron-sulfur cluster-binding protein, rieske family.
 
     0.577
Cphy_3237
KEGG: btk:BT9727_4626 hypothetical protein.
  
     0.524
Cphy_0279
KEGG: cbe:Cbei_4038 hypothetical protein.
  
     0.475
Cphy_2560
PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: cac:CAC3491 protein, related to general stress protein 26(GS26) of B.subtilis (pyridoxinephosphate oxidase family).
  
     0.472
Cphy_2063
Hypothetical protein; KEGG: aau:AAur_2329 putative ABC transporter, integral membrane protein.
  
     0.469
Cphy_1140
PFAM: lipolytic protein G-D-S-L family; KEGG: cth:Cthe_0797 glycoside hydrolase, family 5.
       0.455
Cphy_2289
PFAM: peptidase M23B; KEGG: bcl:ABC2951 metalloendopeptidase.
  
     0.452
Cphy_1865
PFAM: NADPH-dependent FMN reductase; KEGG: mla:Mlab_1736 hypothetical protein.
  
     0.451
Cphy_1142
KEGG: dsy:DSY1749 hypothetical protein.
       0.450
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.