STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rhaML-rhamnose 1-epimerase; Involved in the anomeric conversion of L-rhamnose. (104 aa)    
Predicted Functional Partners:
rhaA
PFAM: L-rhamnose isomerase; KEGG: cbe:Cbei_0446 L-rhamnose isomerase; Belongs to the rhamnose isomerase family.
 
 
 0.994
Cphy_1146
TIGRFAM: rhamnulokinase; PFAM: carbohydrate kinase FGGY; KEGG: cbe:Cbei_0445 rhamnulokinase.
 
  
 0.909
Cphy_3154
PFAM: carbohydrate kinase FGGY; KEGG: cpf:CPF_1049 L-fuculokinase.
 
  
 0.858
Cphy_1148
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; Cupin 2 conserved barrel domain protein; KEGG: cbe:Cbei_0442 helix-turn-helix-domain containing protein, AraC type.
 
   
 0.854
Cphy_1145
PFAM: carbohydrate kinase FGGY; KEGG: cbe:Cbei_4452 carbohydrate kinase, FGGY.
  
  
 0.697
Cphy_0584
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
 
   
 0.665
Cphy_3391
PFAM: carbohydrate kinase FGGY; KEGG: fno:Fnod_0555 carbohydrate kinase FGGY.
  
  
 0.663
xylB
TIGRFAM: xylulokinase; PFAM: carbohydrate kinase FGGY; KEGG: amt:Amet_0591 xylulokinase.
  
  
 0.663
Cphy_1177
PFAM: class II aldolase/adducin family protein; KEGG: cpf:CPF_1051 L-fuculose phosphate aldolase.
 
  
 0.646
Cphy_0583
KEGG: ret:RHE_PE00289 probable sugar ABC transporter, substrate-binding protein.
 
  
 0.603
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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