STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_1180PFAM: microcompartments protein; KEGG: spc:Sputcn32_0210 microcompartments protein. (104 aa)    
Predicted Functional Partners:
Cphy_1179
PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: ooe:OEOE_0394 threonine dehydrogenase or related Zn-dependent dehydrogenase.
 
   
 0.920
Cphy_1181
PFAM: microcompartments protein; KEGG: aha:AHA_1336 bacterial microcompartments family protein.
 
     0.919
Cphy_1178
PFAM: Aldehyde Dehydrogenase_; KEGG: rru:Rru_A0914 aldehyde dehydrogenase.
 
   
 0.898
Cphy_1184
PFAM: Ethanolamine utilization protein EutN/carboxysome structural protein Ccml; KEGG: lwe:lwe1121 ethanolamine and carbon dioxide metabolism.
 
 
 0.885
Cphy_2637
PFAM: Ethanolamine utilization protein EutN/carboxysome structural protein Ccml; KEGG: cpf:CPF_0900 ethanolamine utilization protein EutN.
 
 
 0.840
Cphy_1186
PFAM: microcompartments protein; KEGG: drm:Dred_3269 microcompartments protein.
 
   
 0.829
Cphy_1177
PFAM: class II aldolase/adducin family protein; KEGG: cpf:CPF_1051 L-fuculose phosphate aldolase.
 
     0.753
Cphy_1414
PFAM: microcompartments protein; KEGG: cbf:CLI_2164 bacterial microcompartments family protein.
 
     0.734
Cphy_2643
PFAM: microcompartments protein; KEGG: ckl:CKL_0845 predicted microcompartment shellprotein.
 
     0.734
Cphy_1427
PFAM: microcompartments protein; KEGG: cbh:CLC_2051 bacterial microcompartments family protein.
 
     0.727
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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