STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_1191Iron (metal) dependent repressor, DtxR family; PFAM: iron dependent repressor; KEGG: cbe:Cbei_3088 iron dependent repressor. (121 aa)    
Predicted Functional Partners:
Cphy_2877
TIGRFAM: signal peptidase I; PFAM: peptidase S24 and S26 domain protein; KEGG: ana:alr2975 signal peptidase I; Belongs to the peptidase S26 family.
   
    0.781
metN
ABC transporter related; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.
   
   0.761
Cphy_1192
PFAM: FeoA family protein; KEGG: cbe:Cbei_4198 FeoA family protein.
 
  
 0.699
Cphy_1732
PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; KEGG: cth:Cthe_3022 NADH ubiquinone oxidoreductase, 20 kDa subunit.
    
   0.689
Cphy_3490
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pfl:PFL_0077 zinc ABC transporter, ATP-binding protein.
  
  
 0.591
Cphy_1195
KEGG: spe:Spro_1236 ferric uptake regulator, Fur family; Belongs to the Fur family.
 
  
 0.567
Cphy_1193
PFAM: FeoA family protein; KEGG: cbe:Cbei_4197 FeoA family protein.
  
  
 0.514
Cphy_0440
PFAM: ABC-3 protein; inner-membrane translocator; KEGG: gur:Gura_0048 ABC-3 protein.
 
  
 0.505
Cphy_0438
PFAM: periplasmic solute binding protein; KEGG: lmf:LMOf2365_0168 zinc ABC transporter, zinc-binding protein.
 
  
 0.494
Cphy_1194
Ferrous iron transport protein B; Probable transporter of a GTP-driven Fe(2+) uptake system. Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. FeoB GTPase (TC 9.A.8) family.
 
  
 0.484
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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