STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_1196KEGG: cbe:Cbei_3087 hypothetical protein. (95 aa)    
Predicted Functional Partners:
Cphy_1195
KEGG: spe:Spro_1236 ferric uptake regulator, Fur family; Belongs to the Fur family.
 
     0.812
Cphy_2288
KEGG: tde:TDE0164 hypothetical protein.
 
     0.586
Cphy_0051
PFAM: Peptidoglycan-binding LysM; KEGG: rca:Rcas_0063 peptidoglycan-binding LysM.
  
     0.568
Cphy_0532
PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: cdf:CD2247 putative germination-specific protease; Belongs to the peptidase S8 family.
  
     0.457
Cphy_1194
Ferrous iron transport protein B; Probable transporter of a GTP-driven Fe(2+) uptake system. Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. FeoB GTPase (TC 9.A.8) family.
       0.453
Cphy_3370
Hypothetical protein.
  
     0.436
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.