STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_1202PFAM: Oligosaccharide biosynthesis protein Alg14 like; KEGG: cth:Cthe_1360 polysaccharide biosynthesis protein CpsF. (172 aa)    
Predicted Functional Partners:
Cphy_1203
PFAM: Glycosyltransferase 28 domain; KEGG: cth:Cthe_1359 glycosyltransferase 28-like protein.
 
   
 0.964
Cphy_1204
PFAM: glycosyl transferase group 1; KEGG: cth:Cthe_1357 glycosyl transferase, group 1.
 
  
 0.813
Cphy_1205
Glycosyltransferase; KEGG: cth:Cthe_1356 glycosyltransferase.
 
    0.813
murD
UDP-N-acetylmuramoylalanine--D-glutamate ligase; Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA). Belongs to the MurCDEF family.
  
  
 0.775
Cphy_2472
KEGG: cbh:CLC_1498 cell division protein FtsQ.
  
  
 0.772
Cphy_1206
PFAM: glycosyl transferase group 1; KEGG: cth:Cthe_1357 glycosyl transferase, group 1.
 
  
 0.736
Cphy_1207
KEGG: pdi:BDI_0432 putative hexapeptide transferase family protein.
 
   
 0.726
murC
UDP-N-acetylmuramate--alanine ligase; Cell wall formation; Belongs to the MurCDEF family.
  
  
 0.721
murF
UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily.
  
  
 0.702
Cphy_1208
PFAM: O-antigen polymerase; KEGG: bca:BCE_5389 O-antigen polymerase (wzy).
 
   
 0.689
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.