STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_1214KEGG: oih:OB0250 hypothetical protein. (193 aa)    
Predicted Functional Partners:
Cphy_1215
KEGG: amt:Amet_1520 hypothetical protein.
 
     0.884
Cphy_2097
Hypothetical protein.
  
     0.718
Cphy_3715
KEGG: ckl:CKL_2980 hypothetical protein.
  
     0.502
Cphy_3201
KEGG: ckl:CKL_4052 hypothetical protein.
  
     0.492
Cphy_1055
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tte:TTE2769 ABC-type multidrug/protein/lipid transport system, ATPase component.
  
     0.471
Cphy_1056
PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: tte:TTE2769 ABC-type multidrug/protein/lipid transport system, ATPase component.
  
     0.447
Cphy_2096
PFAM: Coat F domain protein; KEGG: amt:Amet_0905 coat F domain protein.
  
     0.443
Cphy_1216
KEGG: cbe:Cbei_2367 ribose 5-phosphate isomerase.
       0.403
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.