STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xylAKEGG: amt:Amet_3796 xylose isomerase; TIGRFAM: xylose isomerase; PFAM: Xylose isomerase domain protein TIM barrel; Belongs to the xylose isomerase family. (438 aa)    
Predicted Functional Partners:
xylB
TIGRFAM: xylulokinase; PFAM: carbohydrate kinase FGGY; KEGG: amt:Amet_0591 xylulokinase.
 
 
 0.987
Cphy_3398
PFAM: glycoside hydrolase family 43; KEGG: bha:BH3683 xylan beta-1,4-xylosidase; Belongs to the glycosyl hydrolase 43 family.
 
 
 0.928
Cphy_0191
PFAM: glycoside hydrolase family 43; KEGG: bld:BLi00864 xylan beta-1,4-xylosidase; RBL03427; Belongs to the glycosyl hydrolase 43 family.
 
 
 0.927
Cphy_3011
Alpha-N-arabinofuranosidase; PFAM: glycoside hydrolase family 43; KEGG: oih:OB2087 arabinofuranosidase; Belongs to the glycosyl hydrolase 43 family.
 
 
 0.924
Cphy_0875
PFAM: glycoside hydrolase family 43; KEGG: bld:BLi00864 xylan beta-1,4-xylosidase; RBL03427.
 
 
 0.922
Cphy_1578
PFAM: ROK family protein; KEGG: gka:GK3204 fructokinase.
    
 0.919
Cphy_1179
PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: ooe:OEOE_0394 threonine dehydrogenase or related Zn-dependent dehydrogenase.
     
 0.917
Cphy_2028
PFAM: glycoside hydrolase family 43; Glycosyl hydrolase family 32 domain protein; KEGG: sco:SCO0118 xylosidase/arabinosidase; Belongs to the glycosyl hydrolase 43 family.
 
 
 0.917
Cphy_0329
TIGRFAM: glucokinase, ROK family; PFAM: ROK family protein; ATPase BadF/BadG/BcrA/BcrD type; KEGG: cac:CAC2613 transcriptional regulators of NagC/XylR family.
    
 0.854
Cphy_1169
Alpha-N-arabinofuranosidase; PFAM: alpha-L-arabinofuranosidase domain protein; KEGG: gtn:GTNG_1791 alpha-L-arabinofuranosidase.
    
 0.816
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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