STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xylAKEGG: amt:Amet_3796 xylose isomerase; TIGRFAM: xylose isomerase; PFAM: Xylose isomerase domain protein TIM barrel; Belongs to the xylose isomerase family. (438 aa)    
Predicted Functional Partners:
xylB
TIGRFAM: xylulokinase; PFAM: carbohydrate kinase FGGY; KEGG: amt:Amet_0591 xylulokinase.
 
 
 0.986
Cphy_3391
PFAM: carbohydrate kinase FGGY; KEGG: fno:Fnod_0555 carbohydrate kinase FGGY.
 
 
 0.979
Cphy_1179
PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: ooe:OEOE_0394 threonine dehydrogenase or related Zn-dependent dehydrogenase.
     
 0.917
Cphy_1578
PFAM: ROK family protein; KEGG: gka:GK3204 fructokinase.
    
 0.913
Cphy_0329
TIGRFAM: glucokinase, ROK family; PFAM: ROK family protein; ATPase BadF/BadG/BcrA/BcrD type; KEGG: cac:CAC2613 transcriptional regulators of NagC/XylR family.
    
 0.840
Cphy_3573
PFAM: ROK family protein; KEGG: fnu:FN1474 N-acetylmannosamine kinase.
    
 0.840
Cphy_2025
PFAM: glycoside hydrolase family 2 immunoglobulin domain protein beta-sandwich; glycoside hydrolase family 2 TIM barrel; glycoside hydrolase family 2 sugar binding; KEGG: lsa:LSA1711 beta-galactosidase, large subunit (lactase, large subunit).
    
 0.813
Cphy_2026
PFAM: glycoside hydrolase family 42 domain 5 loop region; KEGG: lsa:LSA1710 beta-galactosidase, small subunit (lactase, small subunit).
    
 0.813
Cphy_3160
PFAM: glycoside hydrolase family 2 TIM barrel; glycoside hydrolase family 2 sugar binding; KEGG: cth:Cthe_2197 carbohydrate binding family 6; Belongs to the glycosyl hydrolase 2 family.
    
 0.813
Cphy_3398
PFAM: glycoside hydrolase family 43; KEGG: bha:BH3683 xylan beta-1,4-xylosidase; Belongs to the glycosyl hydrolase 43 family.
 
  
 0.631
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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