Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
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textmining
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experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Cphy_1221KEGG: pfa:PFE0325w hypothetical protein. (623 aa)    
Predicted Functional Partners:
Cphy_1222
SMART: AAA ATPase; KEGG: sun:SUN_1058 hypothetical protein.
 
  
 0.967
Cphy_1220
KEGG: mac:MA4292 cell surface protein.
 
     0.931
Cphy_1490
Hypothetical protein.
  
     0.474
Cphy_2580
Non-specific serine/threonine protein kinase; KEGG: cth:Cthe_2451 SNF2-related protein; PFAM: SNF2-related protein; helicase domain protein; zinc finger SWIM domain protein; SNF2 helicase associated domain protein; SMART: DEAD-like helicases.
       0.459
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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