STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_1223PFAM: ABC-2 type transporter; KEGG: tde:TDE0696 membrane protein, putative. (386 aa)    
Predicted Functional Partners:
Cphy_1224
PFAM: ABC-2 type transporter; KEGG: blo:BL0900 hypothetical protein.
 
     0.963
Cphy_1225
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bad:BAD_1042 probable ATP binding protein of ABC transporter.
 
  
 0.961
Cphy_1239
Integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; KEGG: tde:TDE0148 histidine kinase-related ATPase, putative.
 
  
 0.788
Cphy_1240
Two component transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; response regulator receiver; Sigma-70 region 4 type 2; KEGG: tde:TDE0149 DNA-binding response regulator.
 
   
 0.713
Cphy_0076
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bay:RBAM_030540 putative multidrug ABC transporter, ATPase component.
 
  
 0.622
Cphy_1634
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bld:BLi00349 ABC-2 type transport system ATP-binding protein.
 
  
 0.515
Cphy_0968
PFAM: nitroreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: cbe:Cbei_4919 nitroreductase.
  
  
 0.514
Cphy_1294
PFAM: nitroreductase; KEGG: cac:CAC1551 nitroreductase family protein.
  
  
 0.507
Cphy_1974
PFAM: nitroreductase; KEGG: cbe:Cbei_3418 nitroreductase.
  
  
 0.507
Cphy_2166
PFAM: nitroreductase; KEGG: ckl:CKL_0342 predicted oxidoreductase.
  
  
 0.507
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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