STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Cooccurrence
Coexpression
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[Homology]
Score
metNABC transporter related; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system. (347 aa)    
Predicted Functional Partners:
Cphy_1231
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: amt:Amet_3893 binding-protein-dependent transport systems inner membrane component.
 
 0.999
Cphy_1233
PFAM: NLPA lipoprotein; KEGG: efa:EF2080 lipoprotein, YaeC family; Belongs to the nlpA lipoprotein family.
 
 0.998
Cphy_1191
Iron (metal) dependent repressor, DtxR family; PFAM: iron dependent repressor; KEGG: cbe:Cbei_3088 iron dependent repressor.
   
   0.761
ldh-2
L-lactate dehydrogenase; Catalyzes the conversion of lactate to pyruvate.
       0.758
Cphy_2429
PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: cth:Cthe_0397 ABC transporter related protein.
 
     
0.750
metK
Methionine adenosyltransferase; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme.
  
  
 0.749
metAA
Homoserine O-succinyltransferase; Transfers an acetyl group from acetyl-CoA to L-homoserine, forming acetyl-L-homoserine; Belongs to the MetA family.
  
    0.747
Cphy_1732
PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; KEGG: cth:Cthe_3022 NADH ubiquinone oxidoreductase, 20 kDa subunit.
    
   0.745
Cphy_3110
KEGG: swo:Swol_0934 5,10-methylenetetrahydrofolate reductase; TIGRFAM: 5,10-methylenetetrahydrofolate reductase; PFAM: methylenetetrahydrofolate reductase; Belongs to the methylenetetrahydrofolate reductase family.
   
  
 0.695
Cphy_0443
PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: tte:TTE0835 ABC-type multidrug/protein/lipid transport system, ATPase component.
 
     
0.564
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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