STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_1244PFAM: protein of unknown function DUF214; KEGG: cdf:CD2533 ABC transporter, permease protein. (772 aa)    
Predicted Functional Partners:
Cphy_1243
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: spj:MGAS2096_Spy1111 ABC transporter ATP-binding protein.
 
   0.943
Cphy_1242
Integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: cdf:CD1960 two-component sensor histidine kinase.
 
 
   0.875
Cphy_2078
PFAM: SMC domain protein; ABC transporter related; SMART: AAA ATPase; KEGG: cth:Cthe_0539 ABC transporter related protein.
 
   0.810
Cphy_2077
Integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: cth:Cthe_0538 periplasmic sensor signal transduction histidine kinase.
 
 
   0.739
Cphy_1241
Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: ckl:CKL_3394 hypothetical protein.
 
     0.724
Cphy_1408
KEGG: sep:SE0117 ABC transporter (ATP-binding protein).
  
    0.562
Cphy_2590
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cac:CAC0822 ABC transporter, ATP-binding protein.
  
   0.542
Cphy_1363
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cac:CAC0822 ABC transporter, ATP-binding protein.
  
   0.526
Cphy_3332
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: csc:Csac_0507 ABC transporter related.
  
   0.492
Cphy_1984
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cbh:CLC_1022 ABC transporter, ATP-binding protein.
  
    0.445
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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