STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Coexpression
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[Homology]
Score
Cphy_1263TIGRFAM: dihydroxyacetone kinase, L subunit; PFAM: Dak phosphatase; KEGG: amt:Amet_4113 dihydroxyacetone kinase, L subunit. (215 aa)    
Predicted Functional Partners:
Cphy_1262
KEGG: amt:Amet_4114 dihydroxyacetone kinase, DhaK subunit; TIGRFAM: dihydroxyacetone kinase, DhaK subunit; PFAM: Dak kinase.
 
 0.999
Cphy_3394
PFAM: FAD dependent oxidoreductase; transport-associated; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: tde:TDE0134 oxidoreductase, FAD-dependent.
    
  0.813
Cphy_0320
PFAM: FAD dependent oxidoreductase; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: ctc:CTC02436 glycerol-3-phosphate dehydrogenase.
    
  0.807
gpsA
PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; KEGG: fnu:FN0906 glycerol-3-phosphate dehydrogenase [NAD(P)+]; Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family.
   
 
 0.805
Cphy_3205
PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; Ketopantoate reductase ApbA/PanE domain protein; KEGG: tte:TTE1617 glycerol 3-phosphate dehydrogenase.
   
 
 0.805
Cphy_1264
KEGG: amt:Amet_4120 hypothetical protein.
 
     0.750
Cphy_1261
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: amt:Amet_4115 ABC transporter related.
       0.733
Cphy_1260
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: amt:Amet_4116 ABC transporter related.
       0.729
Cphy_1258
PFAM: inner-membrane translocator; KEGG: amt:Amet_4118 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
       0.665
Cphy_1259
PFAM: inner-membrane translocator; KEGG: amt:Amet_4117 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
       0.664
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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