STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_1264KEGG: amt:Amet_4120 hypothetical protein. (161 aa)    
Predicted Functional Partners:
Cphy_1265
Transcriptional regulator, Fis family; PFAM: helix-turn-helix Fis-type; Resolvase helix-turn-helix domain protein; KEGG: amt:Amet_4111 sigma54 specific transcriptional regulator, Fis family.
 
     0.770
Cphy_1263
TIGRFAM: dihydroxyacetone kinase, L subunit; PFAM: Dak phosphatase; KEGG: amt:Amet_4113 dihydroxyacetone kinase, L subunit.
 
     0.750
Cphy_1257
PFAM: Extracellular ligand-binding receptor; KEGG: amt:Amet_4119 extracellular ligand-binding receptor.
 
     0.676
Cphy_1262
KEGG: amt:Amet_4114 dihydroxyacetone kinase, DhaK subunit; TIGRFAM: dihydroxyacetone kinase, DhaK subunit; PFAM: Dak kinase.
 
     0.670
Cphy_1260
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: amt:Amet_4116 ABC transporter related.
 
     0.595
Cphy_1259
PFAM: inner-membrane translocator; KEGG: amt:Amet_4117 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
     0.548
Cphy_1261
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: amt:Amet_4115 ABC transporter related.
       0.522
Cphy_1089
PFAM: extracellular solute-binding protein family 1; KEGG: dsy:DSY1083 hypothetical protein.
  
     0.519
Cphy_1256
PFAM: protein of unknown function DUF1063; KEGG: tde:TDE2144 hypothetical protein; Belongs to the UPF0597 family.
 
     0.481
Cphy_1258
PFAM: inner-membrane translocator; KEGG: amt:Amet_4118 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
       0.468
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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