STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_1272KEGG: tde:TDE1862 hypothetical protein. (288 aa)    
Predicted Functional Partners:
Cphy_1271
KEGG: tde:TDE1860 hypothetical protein.
 
     0.942
Cphy_1270
PFAM: transcriptional regulator PadR family protein; KEGG: tde:TDE1858 transcriptional regulator, PadR family.
 
     0.878
Cphy_1273
Phage shock protein C, PspC; PFAM: PspC domain protein; KEGG: cac:CAC2659 putative stress-responsive transcriptional regulator PspC.
       0.645
Cphy_0474
Hypothetical protein.
  
     0.594
Cphy_0177
PFAM: protein of unknown function UPF0153; KEGG: cte:CT0872 hypothetical protein.
  
     0.513
Cphy_0345
Hypothetical protein; KEGG: bsu:BG10173 unknown.
  
     0.498
Cphy_3288
KEGG: csc:Csac_1712 hypothetical protein.
  
     0.477
Cphy_1269
Hypothetical protein.
       0.466
Cphy_2436
Sodium pump decarboxylase gamma subunit; Catalyzes the decarboxylation of oxaloacetate coupled to Na(+) translocation; Belongs to the OadG family.
  
     0.452
Cphy_0422
Hypothetical protein; KEGG: sde:Sde_3902 heavy metal efflux pump CzcA.
  
     0.448
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.