STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_1273Phage shock protein C, PspC; PFAM: PspC domain protein; KEGG: cac:CAC2659 putative stress-responsive transcriptional regulator PspC. (58 aa)    
Predicted Functional Partners:
Cphy_3672
Phage shock protein A, PspA; PFAM: PspA/IM30 family protein; KEGG: dsy:DSY1913 hypothetical protein.
  
 
 0.949
Cphy_2838
Multi-sensor hybrid histidine kinase; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; Hpt domain protein; KEGG: pth:PTH_0142 hypothetical protein.
   
 
 0.894
Cphy_2421
KEGG: amt:Amet_3944 membrane protein.
  
  
 0.838
Cphy_1271
KEGG: tde:TDE1860 hypothetical protein.
       0.686
Cphy_1270
PFAM: transcriptional regulator PadR family protein; KEGG: tde:TDE1858 transcriptional regulator, PadR family.
       0.677
Cphy_1272
KEGG: tde:TDE1862 hypothetical protein.
       0.645
Cphy_1965
Membrane protein-like protein; KEGG: tde:TDE1859 hypothetical protein.
  
  
 0.551
Cphy_0156
PFAM: PDZ/DHR/GLGF domain protein; KEGG: ckl:CKL_2696 predicted protease.
  
  
 0.503
Cphy_1346
PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: bld:BLi01390 serine protease Do (heat-shock protein); RBL00645.
  
  
 0.503
Cphy_3543
2-alkenal reductase; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: chy:CHY_0655 serine protease Do.
  
  
 0.503
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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