Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Cphy_1278Hypothetical protein; KEGG: pth:PTH_2361 predicted secreted protein. (227 aa)    
Predicted Functional Partners:
Cphy_1277
KEGG: cbe:Cbei_2068 glutaredoxin-like protein.
       0.499
Cphy_1279
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; KEGG: drm:Dred_1515 regulatory protein GntR, HTH.
       0.448
Cphy_1650
KEGG: cbf:CLI_1187 HD domain protein; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region.
  
     0.426
Cphy_1848
KEGG: cbf:CLI_2295 transcriptional regulator, MerR family.
  
    0.412
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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