STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_1279Transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; KEGG: drm:Dred_1515 regulatory protein GntR, HTH. (125 aa)    
Predicted Functional Partners:
Cphy_1280
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cbf:CLI_0638 ABC transporter, ATP-binding protein.
 
  
 0.926
Cphy_2234
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ckl:CKL_2362 predicted ABC transporter, ATPase component.
 
  
 0.784
Cphy_2319
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; KEGG: drm:Dred_3243 regulatory protein GntR, HTH.
  
    0.759
Cphy_0073
PFAM: regulatory protein GntR HTH; KEGG: cac:CAC0599 transcriptional regulator, GntR family.
  
     0.714
Cphy_3903
PFAM: regulatory protein GntR HTH; KEGG: ckl:CKL_0385 transcriptional regulator.
  
     0.683
Cphy_1281
KEGG: cno:NT01CX_0786 hypothetical protein.
 
     0.617
Cphy_0186
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cbh:CLC_1248 ABC transporter, ATP-binding protein.
 
  
 0.603
Cphy_3464
PFAM: regulatory protein GntR HTH; KEGG: swo:Swol_1390 transcriptional regulator, GntR family.
  
     0.539
Cphy_2320
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: lbu:LBUL_1588 ABC-type multidrug transport system, ATPase component.
 
  
 0.525
Cphy_3904
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ckl:CKL_0384 predicted ABC transporter, ATPase component.
 
  
 0.510
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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