Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
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textmining
Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Cphy_1281KEGG: cno:NT01CX_0786 hypothetical protein. (247 aa)    
Predicted Functional Partners:
Cphy_1280
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cbf:CLI_0638 ABC transporter, ATP-binding protein.
 
     0.902
Cphy_0036
Hypothetical protein; KEGG: cth:Cthe_1829 chromosome segregation ATPases-like protein.
  
     0.682
Cphy_1279
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; KEGG: drm:Dred_1515 regulatory protein GntR, HTH.
 
     0.612
Cphy_1004
Transcriptional regulator, ArsR family; PFAM: regulatory protein ArsR; KEGG: sgo:SGO_1596 transcription regulator.
  
     0.599
Cphy_3335
PFAM: aminoglycoside phosphotransferase; KEGG: cac:CAC2572 possible aminoglycoside phosphotransferase (protein kinase related), diverged.
  
     0.545
Cphy_1208
PFAM: O-antigen polymerase; KEGG: bca:BCE_5389 O-antigen polymerase (wzy).
  
     0.543
Cphy_1277
KEGG: cbe:Cbei_2068 glutaredoxin-like protein.
 
     0.533
Cphy_1207
KEGG: pdi:BDI_0432 putative hexapeptide transferase family protein.
  
     0.515
Cphy_1006
PFAM: ABC-2 type transporter; KEGG: mst:Msp_0196 ABC-type multidrug transport system, permease protein.
  
     0.488
Cphy_2213
PFAM: polysaccharide deacetylase; KEGG: cdf:CD2598 putative oligosaccharide deacetylase.
  
     0.481
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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