STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_1289PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: lme:LEUM_0415 ABC-type multidrug transport system, ATPase component. (299 aa)    
Predicted Functional Partners:
Cphy_1288
Integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: efa:EF2298 sensor histidine kinase VanSB.
 
     0.802
Cphy_1290
PFAM: ABC-2 type transporter; KEGG: lme:LEUM_0416 hypothetical protein.
       0.773
Cphy_2143
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tde:TDE0183 ABC transporter, permease protein.
  
  
 0.603
Cphy_1287
Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: bca:BCE_2749 transcription response regulator-like protein.
 
     0.504
Cphy_0086
KEGG: cbf:CLI_1824 hypothetical protein.
  
     0.418
Cphy_0509
Membrane protein; KEGG: cac:CAC1316 predicted membrane protein.
  
     0.412
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.