STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_1301PFAM: Pectinesterase; KEGG: cac:CAC3373 pectin methylesterase. (345 aa)    
Predicted Functional Partners:
Cphy_2735
PFAM: lipolytic protein G-D-S-L family; KEGG: bld:BLi04100 hypothetical protein.
   
 0.969
Cphy_3869
PFAM: Fibronectin type III domain protein; KEGG: bha:BH0494 exopolygalacturonate lyase.
  
 0.969
Cphy_1612
PFAM: Pectate lyase/Amb allergen; KEGG: cac:CAC0804 pectate lyase related protein, secreted.
 
  
 0.806
Cphy_2567
PFAM: glycoside hydrolase family 28; KEGG: bvu:BVU_1985 glycoside hydrolase family 28; Belongs to the glycosyl hydrolase 28 family.
 
   
 0.798
Cphy_0203
PFAM: glycosyl hydrolase family 88; KEGG: amt:Amet_0895 glycosyl hydrolase, family 88.
 
   
 0.797
Cphy_2736
PFAM: glycoside hydrolase family 28; KEGG: amt:Amet_0899 glycoside hydrolase, family 28; Belongs to the glycosyl hydrolase 28 family.
 
   
 0.791
Cphy_3217
PFAM: glycoside hydrolase family 28; KEGG: fjo:Fjoh_3114 glycoside hydrolase, family 28; Belongs to the glycosyl hydrolase 28 family.
 
   
 0.788
Cphy_2632
PFAM: glycoside hydrolase family 43; KEGG: bvu:BVU_1983 glycoside hydrolase family 43, candidate beta-xylosidase/alpha-L-arabinofuranosidase; Belongs to the glycosyl hydrolase 43 family.
 
   
 0.767
Cphy_2919
PFAM: protein of unknown function DUF1565; KEGG: sde:Sde_2946 hypothetical protein.
   
 0.745
Cphy_1711
Endopygalactorunase-like protein; KEGG: bvu:BVU_0121 glycoside hydrolase family 28; Belongs to the glycosyl hydrolase 28 family.
 
   
 0.739
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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