STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_1302PFAM: putative RNA methylase; KEGG: rca:Rcas_2582 putative RNA methylase. (510 aa)    
Predicted Functional Partners:
nfo
Apurinic endonuclease Apn1; Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic (AP) sites, generating a 3'-hydroxyl group and a 5'-terminal sugar phosphate.
       0.591
Cphy_0177
PFAM: protein of unknown function UPF0153; KEGG: cte:CT0872 hypothetical protein.
  
     0.544
Cphy_0501
KEGG: pdi:BDI_1526 hypothetical protein.
  
     0.488
Cphy_0474
Hypothetical protein.
  
     0.485
Cphy_3743
KEGG: amt:Amet_0345 hypothetical protein.
  
     0.483
Cphy_3475
PFAM: Ig domain protein group 2 domain protein; KEGG: dsy:DSY0726 hypothetical protein.
  
     0.454
Cphy_1304
KEGG: pla:Plav_0415 hypothetical protein.
 
     0.439
Cphy_0345
Hypothetical protein; KEGG: bsu:BG10173 unknown.
  
     0.436
Cphy_1742
Transcriptional regulator, CdaR; KEGG: cac:CA_P0121 Leu-rich protein family protein, YaeG (E.coli) homolog.
  
     0.419
Cphy_1756
PFAM: cyclase family protein; KEGG: ctc:CTC01896 putative polyketide cyclase.
  
     0.418
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.