STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_1305KEGG: ssv:SSU98_0050 hypothetical protein. (259 aa)    
Predicted Functional Partners:
Cphy_1306
KEGG: cbf:CLI_0627 hypothetical protein.
       0.741
Cphy_1304
KEGG: pla:Plav_0415 hypothetical protein.
 
     0.528
Cphy_1307
PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: cth:Cthe_3110 UBA/ThiF-type NAD/FAD binding fold.
       0.491
Cphy_3220
Hypothetical protein; KEGG: cdf:CD1883 AraC-family transcriptional regulator.
  
     0.470
Cphy_0279
KEGG: cbe:Cbei_4038 hypothetical protein.
  
    0.416
Cphy_1444
PFAM: protein of unknown function DUF214; KEGG: bcz:BCZK2228 ABC transporter, permease.
  
    0.409
Cphy_1872
Putative homoserine kinase type II (protein kinase fold)-like protein; KEGG: btk:BT9727_0548 hypothetical protein.
  
     0.405
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.