STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_1313PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: cbe:Cbei_0309 GntR domain protein. (232 aa)    
Predicted Functional Partners:
Cphy_3764
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: cbe:Cbei_4660 transcriptional regulator, GntR family.
 
  
 0.568
Cphy_1312
PFAM: protein of unknown function DUF45; KEGG: cpf:CPF_0800 hypothetical protein.
       0.509
Cphy_0655
PFAM: regulatory protein GntR HTH; KEGG: cbe:Cbei_4085 transcriptional regulator, GntR family.
 
  
 0.452
Cphy_1317
PFAM: FAD linked oxidase domain protein; KEGG: cbe:Cbei_0312 FAD linked oxidase domain protein.
 
  
 0.414
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.