STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpmFTIGRFAM: ribosomal protein L32; PFAM: ribosomal L32p protein; KEGG: chy:CHY_1453 ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family. (61 aa)    
Predicted Functional Partners:
rpsB
PFAM: ribosomal protein S2; KEGG: bld:BLi01870 ribosomal protein S2; RBL02224; Belongs to the universal ribosomal protein uS2 family.
  
 0.997
rplU
Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
  
 0.996
rplL
Ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family.
  
 0.996
rplT
Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.
  
 0.995
rplS
Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.
  
 0.995
rpmI
PFAM: ribosomal protein L35; KEGG: cbf:CLI_3194 ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family.
  
 
 0.994
rpsT
Ribosomal protein S20; Binds directly to 16S ribosomal RNA.
   
 
 0.994
rpsP
PFAM: ribosomal protein S16; KEGG: cno:NT01CX_2212 ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.
  
 
 0.994
rpmB
PFAM: ribosomal protein L28; KEGG: swo:Swol_0757 50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
  
 
 0.994
rplQ
PFAM: ribosomal protein L17; KEGG: cth:Cthe_2933 ribosomal protein L17.
  
 0.994
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.