Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
Cphy_1330Exonuclease-like protein; KEGG: cac:CAC0978 possible elongation subunit of DNA-dependent DNA polymerase. (392 aa)    
Predicted Functional Partners:
Cphy_2472
KEGG: cbh:CLC_1498 cell division protein FtsQ.
  
     0.744
Cphy_0052
Hypothetical protein.
  
     0.720
Cphy_2363
Hypothetical protein; KEGG: tte:TTE1601 membrane-fusion protein.
  
     0.710
Cphy_0457
Hypothetical protein.
  
     0.680
Cphy_2293
Hypothetical protein.
  
     0.665
Cphy_1338
PFAM: NUDIX hydrolase; KEGG: cdf:CD3398 putative DNA repair protein (nucleotide pyrophosphatase); Belongs to the Nudix hydrolase family.
 
    0.644
rpoZ
DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
  
    0.640
Cphy_2930
Hypothetical protein.
  
     0.603
Cphy_0423
Hypothetical protein.
  
     0.590
Cphy_0475
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: cth:Cthe_1383 tetratricopeptide TPR_2.
  
     0.577
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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