STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_1344Hypothetical protein; KEGG: cth:Cthe_0634 serine/threonine protein kinase. (342 aa)    
Predicted Functional Partners:
Cphy_3823
KEGG: rno:679495 hypothetical protein LOC679495.
 
  
 0.802
Cphy_2712
KEGG: cth:Cthe_0470 hypothetical protein.
  
    0.777
Cphy_0043
Hypothetical protein.
  
     0.773
Cphy_0351
Hypothetical protein.
  
     0.773
Cphy_0460
Hypothetical protein; KEGG: mst:Msp_1095 DNA double-strand break repair protein Rad50.
  
     0.773
Cphy_2682
Hypothetical protein; KEGG: mmu:20957 synaptonemal complex protein 1.
  
     0.773
Cphy_2842
Hypothetical protein; KEGG: ehi:82.t00025 viral A-type inclusion protein repeat, putative Pfam: Nha1_C DUF148 ERM Prefoldin_2 WXG100 Vicilin_N TBPIP Myosin_tail_1 Filament YscO Bacillus_HBL EzrA DUF948 Rab5-bind Laminin_I MpPF2 Vps51 MSG Spectrin LMP PROSITE: GLU_RICH LYS_RICH.
 
     0.773
Cphy_0146
Hypothetical protein.
  
     0.772
Cphy_2627
Hypothetical protein; KEGG: mmu:100043744 similar to retinitis pigmentosa GTPase regulator.
  
     0.772
Cphy_2713
TIGRFAM: flagellar export protein FliJ; KEGG: cth:Cthe_0469 flagellar export protein FliJ.
  
     0.772
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.