STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_1351Hypothetical protein. (135 aa)    
Predicted Functional Partners:
Cphy_0363
Hypothetical protein.
  
     0.748
secE
Preprotein translocase, SecE subunit; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation.
  
     0.742
Cphy_3472
Leucyl aminopeptidase (aminopeptidase T)-like protein; KEGG: tme:Tmel_0149 peptidase M29, aminopeptidase II.
  
     0.741
Cphy_0629
PFAM: ANTAR domain protein; KEGG: cbe:Cbei_4205 response regulator receiver and ANTAR domain protein.
  
     0.731
Cphy_0037
Hypothetical protein.
  
     0.729
Cphy_2895
KEGG: tva:TVAG_264660 hypothetical protein Pfam: RNA_polI_A34 MAP7 FYDLN_acid PROSITE: ASP_RICH GLU_RICH LYS_RICH.
  
     0.729
Cphy_0423
Hypothetical protein.
  
     0.722
Cphy_2296
Hypothetical protein.
  
     0.721
Cphy_0034
Hypothetical protein; KEGG: cth:Cthe_1337 type II secretion system protein.
  
     0.711
Cphy_3443
Hypothetical protein.
  
     0.700
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.