STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_1392PFAM: extracellular solute-binding protein family 1; KEGG: cpe:CPE0371 conserved hypothetical protein. (449 aa)    
Predicted Functional Partners:
Cphy_1391
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_PF00317 probable sugar ABC transporter, permease protein.
  
   0.728
Cphy_1390
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: lin:lin0218 similar to sugar ABC transporters, permease proteins.
 
   0.702
Cphy_3402
PFAM: extracellular solute-binding protein family 1; KEGG: bcl:ABC0385 lactose ABC transporter substrate-binding protein.
  
     0.606
Cphy_0494
PFAM: extracellular solute-binding protein family 1; KEGG: gtn:GTNG_0824 sugar transport system sugar-binding protein.
  
     0.552
Cphy_0619
PFAM: extracellular solute-binding protein family 1; KEGG: amt:Amet_0896 extracellular solute-binding protein, family 1.
  
     0.525
Cphy_3590
PFAM: extracellular solute-binding protein family 1; KEGG: eca:ECA0848 putative sugar ABC transporter, periplasmic binding protein.
  
     0.523
Cphy_2144
PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: tde:TDE0182 ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.
  
 
 0.520
Cphy_3611
PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: cth:Cthe_1862 ABC transporter related protein.
  
 
 0.520
Cphy_1393
PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase internal region; KEGG: cbe:Cbei_1382 histidine kinase internal region.
       0.499
Cphy_1394
Two component transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; response regulator receiver; KEGG: cpf:CPF_2344 DNA-binding response regulator, AraC family.
 
     0.478
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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