Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Cphy_1400PFAM: GCN5-related N-acetyltransferase; KEGG: cbf:CLI_2651 acetyltransferase, GNAT family. (161 aa)    
Predicted Functional Partners:
Cphy_0657
PFAM: regulatory protein TetR; KEGG: tde:TDE0332 transcriptional regulator, TetR family.
  
     0.497
Cphy_1398
Hypothetical protein.
       0.476
Cphy_1399
KEGG: csc:Csac_2163 dipeptidyl aminopeptidase/acylaminoacyl-peptidase-like protein.
  
    0.476
Cphy_0941
KEGG: cno:NT01CX_1307 hypothetical protein.
  
     0.463
Cphy_2161
PFAM: Cupin 2 conserved barrel domain protein; KEGG: cbe:Cbei_3240 cupin 2, conserved barrel domain protein.
  
     0.421
Cphy_1663
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: bld:BLi04061 YwbC.
  
     0.417
Cphy_1010
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: mac:MA0999 hypothetical protein.
 
 
 0.414
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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