Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Cphy_1411PFAM: microcompartments protein; KEGG: cbf:CLI_2149 bacterial microcompartments family protein. (96 aa)    
Predicted Functional Partners:
Cphy_2637
PFAM: Ethanolamine utilization protein EutN/carboxysome structural protein Ccml; KEGG: cpf:CPF_0900 ethanolamine utilization protein EutN.
 
 
 0.844
Cphy_1184
PFAM: Ethanolamine utilization protein EutN/carboxysome structural protein Ccml; KEGG: lwe:lwe1121 ethanolamine and carbon dioxide metabolism.
 
 
 0.842
Cphy_1425
PFAM: Ethanolamine utilization protein EutN/carboxysome structural protein Ccml; KEGG: cbh:CLC_2053 putative polyhedral organelle formation protein.
 
 
 0.836
Cphy_1413
KEGG: dde:Dde_3289 hypothetical protein.
       0.781
Cphy_1412
KEGG: amt:Amet_3840 membrane spanning protein.
       0.773
Cphy_1414
PFAM: microcompartments protein; KEGG: cbf:CLI_2164 bacterial microcompartments family protein.
 
    
0.728
Cphy_1181
PFAM: microcompartments protein; KEGG: aha:AHA_1336 bacterial microcompartments family protein.
 
     0.725
Cphy_1415
PFAM: microcompartments protein; KEGG: amt:Amet_3837 microcompartments protein.
 
    
0.693
Cphy_1416
KEGG: cbh:CLC_2061 aldehyde dehydrogenase family protein.
     
 0.603
Cphy_1419
PFAM: microcompartments protein; KEGG: ctc:CTC01447 ethanolamine utilization protein eutS.
 
  
 0.587
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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