Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Cphy_1412KEGG: amt:Amet_3840 membrane spanning protein. (338 aa)    
Predicted Functional Partners:
Cphy_1413
KEGG: dde:Dde_3289 hypothetical protein.
 
     0.948
cutC
Formate C-acetyltransferase; Glycine radical enzyme that catalyzes the cleavage of a C-N bond in choline, producing trimethylamine (TMA) and acetaldehyde. Belongs to the glycyl radical enzyme (GRE) family. CutC subfamily.
 
     0.882
Cphy_1422
KEGG: cbh:CLC_2056 hypothetical protein.
 
     0.860
Cphy_1424
PFAM: microcompartments protein; KEGG: drm:Dred_3272 microcompartments protein.
 
     0.857
Cphy_1426
PFAM: protein of unknown function DUF861 cupin_3; Ethanolamine utilisation EutQ family protein; Cupin 2 conserved barrel domain protein; KEGG: cbf:CLI_2153 ethanolamine utilization protein EutQ-like protein.
 
     0.830
cutD
Glycyl-radical enzyme activating protein family; Catalyzes activation of the choline trimethylamine-lyase CutC under anaerobic conditions by generation of an organic free radical on a glycine residue, via an homolytic cleavage of S-adenosyl-L-methionine (SAM).
 
    0.829
Cphy_1423
TIGRFAM: ethanolamine utilization protein EutJ family protein; KEGG: cbh:CLC_2055 ethanolamine utilization protein EutJ family protein.
 
     0.807
Cphy_1414
PFAM: microcompartments protein; KEGG: cbf:CLI_2164 bacterial microcompartments family protein.
 
     0.797
Cphy_1425
PFAM: Ethanolamine utilization protein EutN/carboxysome structural protein Ccml; KEGG: cbh:CLC_2053 putative polyhedral organelle formation protein.
 
     0.789
Cphy_1410
PFAM: regulatory protein MerR; KEGG: cbf:CLI_2168 transcriptional regulator, MerR family.
  
   
 0.780
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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