Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Cphy_1425PFAM: Ethanolamine utilization protein EutN/carboxysome structural protein Ccml; KEGG: cbh:CLC_2053 putative polyhedral organelle formation protein. (87 aa)    
Predicted Functional Partners:
Cphy_1427
PFAM: microcompartments protein; KEGG: cbh:CLC_2051 bacterial microcompartments family protein.
 
 
 0.937
Cphy_1423
TIGRFAM: ethanolamine utilization protein EutJ family protein; KEGG: cbh:CLC_2055 ethanolamine utilization protein EutJ family protein.
 
  
 0.935
Cphy_1424
PFAM: microcompartments protein; KEGG: drm:Dred_3272 microcompartments protein.
 
     0.932
Cphy_1426
PFAM: protein of unknown function DUF861 cupin_3; Ethanolamine utilisation EutQ family protein; Cupin 2 conserved barrel domain protein; KEGG: cbf:CLI_2153 ethanolamine utilization protein EutQ-like protein.
 
  
 0.925
Cphy_1422
KEGG: cbh:CLC_2056 hypothetical protein.
 
  
 0.919
Cphy_1420
KEGG: cbh:CLC_2057 GTP-binding protein, EutP/PduV family; Belongs to the EutP/PduV family.
 
   
 0.893
Cphy_1414
PFAM: microcompartments protein; KEGG: cbf:CLI_2164 bacterial microcompartments family protein.
 
 
 0.876
Cphy_1415
PFAM: microcompartments protein; KEGG: amt:Amet_3837 microcompartments protein.
 
 
 0.875
Cphy_1430
PFAM: microcompartments protein; KEGG: cbf:CLI_2149 bacterial microcompartments family protein.
 
 
 0.850
Cphy_1411
PFAM: microcompartments protein; KEGG: cbf:CLI_2149 bacterial microcompartments family protein.
 
 
 0.836
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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