STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_1432PFAM: Isoprenylcysteine carboxyl methyltransferase; KEGG: ckl:CKL_0584 hypothetical protein. (187 aa)    
Predicted Functional Partners:
Cphy_0265
KEGG: sbl:Sbal_2840 hypothetical protein.
    
 0.937
Cphy_0673
PFAM: Abortive infection protein; KEGG: cef:CE0449 hypothetical protein.
  
     0.509
Cphy_1760
KEGG: ctc:CTC01924 membrane spanning protein.
  
     0.492
Cphy_1431
Hypothetical protein.
       0.475
rpsM
Ribosomal protein S13; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family.
   
    0.469
Cphy_2119
PFAM: cytochrome c biogenesis protein transmembrane region; Heavy metal transport/detoxification protein; KEGG: cth:Cthe_1849 heavy metal transport/detoxification protein.
       0.440
Cphy_1635
KEGG: bca:BCE_1989 membrane protein, putative.
  
    0.438
Cphy_1835
KEGG: bha:BH1004 putative ABC-2 type transport system permease protein.
  
    0.438
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
       0.418
Cphy_1957
TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; PFAM: ComEC/Rec2-related protein; KEGG: bce:BC4322 ComE operon protein 3.
  
    0.411
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.