STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_1443KEGG: bca:BCE_2511 ABC transporter, permease protein, putative. (296 aa)    
Predicted Functional Partners:
Cphy_1444
PFAM: protein of unknown function DUF214; KEGG: bcz:BCZK2228 ABC transporter, permease.
 
     0.853
Cphy_1445
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: btl:BALH_2221 ABC transporter, ATP-binding protein.
 
     0.785
Cphy_0276
Transcriptional regulator, MerR family; PFAM: regulatory protein MerR; KEGG: dsy:DSY1016 hypothetical protein.
  
     0.585
Cphy_2666
KEGG: amt:Amet_3774 periplasmic binding protein.
 
     0.450
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.