STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_1447PFAM: protein of unknown function DUF6 transmembrane; KEGG: cbh:CLC_1960 hypothetical protein. (304 aa)    
Predicted Functional Partners:
Cphy_1446
PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: cbf:CLI_2079 transcriptional regulator, GntR family/aminotransferase, classes I and II.
 
   
 0.744
Cphy_2211
KEGG: lbu:LBUL_0835 hypothetical protein.
  
     0.510
Cphy_1979
PFAM: regulatory protein MarR; KEGG: cbf:CLI_2873 transcriptional regulator, MarR family.
  
  
 0.497
Cphy_2806
KEGG: cbf:CLI_0985 hypothetical protein.
  
     0.463
Cphy_1296
PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: dsy:DSY1235 hypothetical protein.
 
     0.446
Cphy_2212
PFAM: glycosyl transferase family 2; chitin synthase; KEGG: msm:MSMEG_0476 chitin synthase.
  
   
 0.443
Cphy_2816
KEGG: cbf:CLI_0985 hypothetical protein.
  
     0.430
Cphy_0658
KEGG: pmy:Pmen_4204 hypothetical protein.
  
     0.407
Cphy_2228
Transcriptional regulator, GntR family with aminotransferase domain; PFAM: regulatory protein GntR HTH; aminotransferase class I and II; Helix-turn-helix type 11 domain protein; KEGG: bat:BAS2409 hypothetical protein.
 
   
 0.403
Cphy_1448
TIGRFAM: phosphonate ABC transporter, periplasmic phosphonate-binding protein; KEGG: llm:llmg_0312 phosphonate ABC transporter, phosphonate-binding protein PhnD.
       0.400
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.