Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Cphy_1457PFAM: beta-lactamase; KEGG: ckl:CKL_0345 predicted peptidoglycan biosynthesis protein. (325 aa)    
Predicted Functional Partners:
Cphy_1124
PFAM: conserved hypothetical protein; KEGG: cac:CAC0185 uncharacterized membrane protein, YBBC B.subtilis ortholog.
  
 0.871
Cphy_1456
KEGG: mbb:BCG_2012 hypothetical protein.
 
     0.614
Cphy_2202
PFAM: phosphopantetheine-binding; KEGG: ckl:CKL_1730 polyketide synthase-related protein.
 
  
 0.608
Cphy_1458
PFAM: regulatory protein MerR; KEGG: cpr:CPR_0445 transcriptional regulator, MerR family.
 
     0.557
Cphy_1501
N-acyl-D-glutamate deacylase; PFAM: D-aminoacylase domain protein; Amidohydrolase 3; KEGG: drm:Dred_0263 N-acyl-D-amino-acid deacylase.
     0.514
Cphy_1768
KEGG: cbe:Cbei_0751 PTS system, glucose subfamily, IIA subunit; TIGRFAM: PTS system, glucose subfamily, IIA subunit; PTS system, glucose-like IIB subunint; PFAM: sugar-specific permease EIIA 1 domain; phosphotransferase system PTS EIIB protein; phosphotransferase system EIIC.
  
  
 0.502
Cphy_2348
Glycogen/starch/alpha-glucan phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.
   
    0.440
Cphy_1699
Phosphopantetheine-binding; PFAM: condensation domain protein; phosphopantetheine-binding; KEGG: bbt:BBta_1089 putative non-ribosomal peptide synthase.
  
  
 0.429
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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