STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_1458PFAM: regulatory protein MerR; KEGG: cpr:CPR_0445 transcriptional regulator, MerR family. (161 aa)    
Predicted Functional Partners:
Cphy_0276
Transcriptional regulator, MerR family; PFAM: regulatory protein MerR; KEGG: dsy:DSY1016 hypothetical protein.
  
   
 0.735
Cphy_1457
PFAM: beta-lactamase; KEGG: ckl:CKL_0345 predicted peptidoglycan biosynthesis protein.
 
     0.557
Cphy_0098
PFAM: regulatory protein MerR; KEGG: cdf:CD1016 MerR-family transcriptional regulator.
  
   
 0.527
Cphy_0907
PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: cbf:CLI_2985 CBS/transporter-associated domain protein.
  
    0.474
Cphy_0738
Transcriptional regulator, MerR family; PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; KEGG: cbe:Cbei_0557 putative transcriptional regulator, MerR family.
  
   
 0.439
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.