STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_1468PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: afu:AF1136 ABC-2 type transport system ATP-binding protein. (319 aa)    
Predicted Functional Partners:
Cphy_1469
PFAM: ABC-2 type transporter; KEGG: cbe:Cbei_3825 ABC transporter permease protein.
  
    0.780
Cphy_1470
Hypothetical protein.
       0.777
Cphy_1471
PFAM: protein of unknown function DUF347; KEGG: rha:RHA1_ro08567 hypothetical protein.
       0.664
Cphy_1465
PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: ckl:CKL_0436 SerA.
 
     0.506
Cphy_1466
Integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: cbe:Cbei_1804 integral membrane sensor signal transduction histidine kinase.
       0.432
Cphy_1467
Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: chy:CHY_0092 DNA-binding response regulator.
       0.432
Cphy_1279
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; KEGG: drm:Dred_1515 regulatory protein GntR, HTH.
  
    0.422
Cphy_2235
PFAM: regulatory protein GntR HTH; KEGG: cac:CAC0265 transcriptional regulator, GntR family.
  
    0.422
rpsK
Ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.
  
     0.415
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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