STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_1485PFAM: protein of unknown function DUF182; KEGG: dsy:DSY0877 hypothetical protein. (374 aa)    
Predicted Functional Partners:
Cphy_1491
KEGG: tva:TVAG_164520 conserved hypothetical protein.
  
 0.950
Cphy_1497
TIGRFAM: selenium-dependent molybdenum hydroxylase 1; PFAM: aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; ferredoxin; [2Fe-2S]-binding domain protein; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: cbe:Cbei_1982 aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding.
 
  
 0.932
Cphy_1519
KEGG: sso:SSO2432 hypothetical protein.
 
  
 0.906
Cphy_0059
PFAM: molybdopterin dehydrogenase FAD-binding; KEGG: cbf:CLI_2901 xanthine dehydrogenase family protein, FAD-binding subunit.
 
  
 0.892
Cphy_0058
PFAM: aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: cbh:CLC_2728 xanthine dehydrogenase family protein, molybdopterin-binding subunit.
 
  
 0.839
Cphy_0060
PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: cbf:CLI_0333 xanthine dehydrogenase family protein, iron-sulfur-binding subunit.
 
  
 0.838
Cphy_1517
PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: drm:Dred_2775 (2Fe-2S)-binding domain protein.
 
  
 0.836
Cphy_1518
PFAM: aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: drm:Dred_2776 aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding.
 
  
 0.832
Cphy_1516
PFAM: molybdopterin dehydrogenase FAD-binding; KEGG: cdf:CD2101 putative FAD-binding subunit of oxidoreductase.
 
  
 0.823
Cphy_1488
KEGG: cbh:CLC_2789 hypothetical protein.
   
 0.820
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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