STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_1491KEGG: tva:TVAG_164520 conserved hypothetical protein. (247 aa)    
Predicted Functional Partners:
Cphy_1488
KEGG: cbh:CLC_2789 hypothetical protein.
     0.952
Cphy_1485
PFAM: protein of unknown function DUF182; KEGG: dsy:DSY0877 hypothetical protein.
  
 0.950
Cphy_1497
TIGRFAM: selenium-dependent molybdenum hydroxylase 1; PFAM: aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; ferredoxin; [2Fe-2S]-binding domain protein; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: cbe:Cbei_1982 aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding.
 
  
 0.820
Cphy_1487
PFAM: SirA family protein; KEGG: cdf:CD3667 hypothetical protein; Belongs to the sulfur carrier protein TusA family.
 
   
 0.812
Cphy_1519
KEGG: sso:SSO2432 hypothetical protein.
 
     0.788
Cphy_1478
Molybdopterin binding domain; Catalyzes the insertion of molybdate into adenylated molybdopterin with the concomitant release of AMP. Belongs to the MoeA family.
 
     0.770
Cphy_1489
KEGG: tte:TTE2789 selenocysteine lyase; TIGRFAM: cysteine desulfurase family protein; PFAM: aminotransferase class V; glycine hydroxymethyltransferase.
 
   
 0.765
Cphy_1516
PFAM: molybdopterin dehydrogenase FAD-binding; KEGG: cdf:CD2101 putative FAD-binding subunit of oxidoreductase.
 
  
 0.762
Cphy_1490
Hypothetical protein.
 
   
 0.750
Cphy_1518
PFAM: aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: drm:Dred_2776 aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding.
 
   
 0.700
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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