Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Cphy_1494TIGRFAM: selenium metabolism protein SsnA; PFAM: amidohydrolase; KEGG: efa:EF2582 proteoglycan. (445 aa)    
Predicted Functional Partners:
Cphy_1495
Hypothetical protein; KEGG: efa:EF2581 oxidoreductase, pyridine nucleotide-disulfide family.
 
    0.910
Cphy_1497
TIGRFAM: selenium-dependent molybdenum hydroxylase 1; PFAM: aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; ferredoxin; [2Fe-2S]-binding domain protein; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: cbe:Cbei_1982 aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding.
 
  
 0.869
Cphy_1496
Dihydropyrimidinase; KEGG: efa:EF2580 D-hydantoinase; TIGRFAM: dihydropyrimidinase; PFAM: amidohydrolase.
 
  
 0.820
Cphy_1499
TIGRFAM: diaminopropionate ammonia-lyase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: dsy:DSY1809 hypothetical protein.
 
  
 0.724
Cphy_1500
PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: drm:Dred_0260 peptidase M20.
 
  
 0.695
Cphy_1491
KEGG: tva:TVAG_164520 conserved hypothetical protein.
 
    0.604
Cphy_1488
KEGG: cbh:CLC_2789 hypothetical protein.
  
  
 0.596
birA
biotin--acetyl-CoA-carboxylase ligase; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.
  
  
 0.553
Cphy_1498
PFAM: Xanthine/uracil/vitamin C permease; KEGG: efa:EF2573 xanthine/uracil permease family protein.
 
  
 0.529
Cphy_1493
TIGRFAM: endoribonuclease L-PSP; PFAM: Endoribonuclease L-PSP; KEGG: cbe:Cbei_0471 putative endoribonuclease L-PSP.
  
    0.460
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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