STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Cphy_1499TIGRFAM: diaminopropionate ammonia-lyase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: dsy:DSY1809 hypothetical protein. (406 aa)    
Predicted Functional Partners:
Cphy_1500
PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: drm:Dred_0260 peptidase M20.
  
 0.947
Cphy_1497
TIGRFAM: selenium-dependent molybdenum hydroxylase 1; PFAM: aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; ferredoxin; [2Fe-2S]-binding domain protein; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: cbe:Cbei_1982 aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding.
 
  
 0.757
Cphy_1494
TIGRFAM: selenium metabolism protein SsnA; PFAM: amidohydrolase; KEGG: efa:EF2582 proteoglycan.
 
  
 0.724
Cphy_1496
Dihydropyrimidinase; KEGG: efa:EF2580 D-hydantoinase; TIGRFAM: dihydropyrimidinase; PFAM: amidohydrolase.
 
  
 0.711
Cphy_0603
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: cdf:CD2682 pyruvate-flavodoxin oxidoreductase.
  
  
 0.695
Cphy_1495
Hypothetical protein; KEGG: efa:EF2581 oxidoreductase, pyridine nucleotide-disulfide family.
 
  
 0.691
Cphy_3558
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: cno:NT01CX_1854 pyruvate:ferredoxin (flavodoxin) oxidoreductase.
  
  
 0.670
ilvD
KEGG: cbe:Cbei_1510 dihydroxy-acid dehydratase; TIGRFAM: dihydroxy-acid dehydratase; PFAM: dihydroxy-acid and 6-phosphogluconate dehydratase; Belongs to the IlvD/Edd family.
  
 
 0.652
Cphy_3830
PFAM: dihydroxy-acid and 6-phosphogluconate dehydratase; KEGG: cbe:Cbei_4095 dihydroxy-acid dehydratase; Belongs to the IlvD/Edd family.
  
 
 0.652
Cphy_1498
PFAM: Xanthine/uracil/vitamin C permease; KEGG: efa:EF2573 xanthine/uracil permease family protein.
 
   
 0.630
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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