STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_1500PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: drm:Dred_0260 peptidase M20. (394 aa)    
Predicted Functional Partners:
Cphy_1499
TIGRFAM: diaminopropionate ammonia-lyase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: dsy:DSY1809 hypothetical protein.
  
 0.947
Cphy_1501
N-acyl-D-glutamate deacylase; PFAM: D-aminoacylase domain protein; Amidohydrolase 3; KEGG: drm:Dred_0263 N-acyl-D-amino-acid deacylase.
 
  
 0.868
Cphy_1497
TIGRFAM: selenium-dependent molybdenum hydroxylase 1; PFAM: aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; ferredoxin; [2Fe-2S]-binding domain protein; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: cbe:Cbei_1982 aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding.
 
  
 0.719
Cphy_1494
TIGRFAM: selenium metabolism protein SsnA; PFAM: amidohydrolase; KEGG: efa:EF2582 proteoglycan.
 
  
 0.695
argG
PFAM: argininosuccinate synthase; KEGG: cth:Cthe_0179 argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily.
 
 
 0.597
Cphy_1496
Dihydropyrimidinase; KEGG: efa:EF2580 D-hydantoinase; TIGRFAM: dihydropyrimidinase; PFAM: amidohydrolase.
 
  
 0.560
Cphy_1768
KEGG: cbe:Cbei_0751 PTS system, glucose subfamily, IIA subunit; TIGRFAM: PTS system, glucose subfamily, IIA subunit; PTS system, glucose-like IIB subunint; PFAM: sugar-specific permease EIIA 1 domain; phosphotransferase system PTS EIIB protein; phosphotransferase system EIIC.
     
 0.539
argC
N-acetyl-gamma-glutamyl-phosphate reductase; Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde. Belongs to the NAGSA dehydrogenase family. Type 1 subfamily.
  
 
 0.513
guaA
GMP synthase, large subunit; Catalyzes the synthesis of GMP from XMP.
     
 0.476
nadE
NAD+ synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
   
 
 0.426
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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