STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_1505KEGG: amt:Amet_4319 hypothetical protein. (117 aa)    
Predicted Functional Partners:
Cphy_1504
PFAM: protein of unknown function DUF1576; KEGG: amt:Amet_4320 protein of unknown function DUF1576.
 
     0.957
Cphy_2838
Multi-sensor hybrid histidine kinase; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; Hpt domain protein; KEGG: pth:PTH_0142 hypothetical protein.
  
  
 0.888
Cphy_2685
KEGG: lic:LIC11380 RNA polymerase sigma-28 factor; TIGRFAM: RNA polymerase sigma factor, FliA/WhiG family; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2.
  
 
 0.796
Cphy_2859
PFAM: helix-turn-helix domain protein; KEGG: btk:BT9727_1061 probable transcriptional regulator.
  
     0.728
Cphy_0091
Protein serine/threonine phosphatase; PFAM: Stage II sporulation E family protein; KEGG: cth:Cthe_0427 serine phosphatase.
  
 
 0.706
Cphy_1506
PFAM: NUDIX hydrolase; KEGG: mma:MM_2810 hypothetical protein.
 
     0.694
Cphy_0476
Anti-sigma-factor antagonist; TIGRFAM: anti-anti-sigma factor; anti-sigma F factor antagonist; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: amt:Amet_2212 anti-sigma-factor antagonist.
  
 
 0.671
Cphy_2082
PFAM: Radical SAM domain protein; biotin and thiamin synthesis associated; KEGG: cbe:Cbei_4439 biotin and thiamin synthesis associated.
   
    0.647
Cphy_2706
PFAM: MotA/TolQ/ExbB proton channel; KEGG: amt:Amet_2714 MotA/TolQ/ExbB proton channel.
   
    0.647
Cphy_2712
KEGG: cth:Cthe_0470 hypothetical protein.
   
    0.647
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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